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Pictet-Spenglerase AsKslB in complex with product of L-Trp and a-ketoglutaric acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 296.15 PEG4000
Crystal Properties Matthews coefficient Solvent content 1.89 35.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.22 α = 90 b = 59.22 β = 90 c = 332.03 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 9M 2024-12-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL02U1 0.987 SSRF BL02U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.11 44.2 98.4 0.998 16.3 18.5 34941
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.11 2.16 0.763 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.11 41.55 33006 1778 97.99 0.2115 0.20937 0.218 0.25207 0.2612 RANDOM 40.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.782 r_dihedral_angle_3_deg 15.356 r_long_range_B_refined 6.954 r_long_range_B_other 6.942 r_dihedral_angle_1_deg 6.91 r_scangle_other 5.176 r_mcangle_it 4.57 r_mcangle_other 4.57 r_scbond_it 3.563 r_scbond_other 3.563
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.782 r_dihedral_angle_3_deg 15.356 r_long_range_B_refined 6.954 r_long_range_B_other 6.942 r_dihedral_angle_1_deg 6.91 r_scangle_other 5.176 r_mcangle_it 4.57 r_mcangle_other 4.57 r_scbond_it 3.563 r_scbond_other 3.563 r_mcbond_it 3.238 r_mcbond_other 3.238 r_angle_refined_deg 1.575 r_angle_other_deg 0.844 r_chiral_restr 0.082 r_gen_planes_other 0.009 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4659 Nucleic Acid Atoms Solvent Atoms 191 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement xia2 data scaling xia2 data reduction MOLREP phasing PDB_EXTRACT data extraction