Experiment: 9UUE

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4YJY

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		291	1.25 M sodium citrate tribasic, 0.1 M HEPES pH 8.0

Crystal Properties
Matthews coefficient	Solvent content
3.74	67.15

Symmetry
Space Group	I 2 2 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 2M		2022-10-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.2	0.918	BESSY	14.2

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.77	47.18	100	0.998	11.63	13.39		126334			30.31

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.77	1.88			0.413

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.77	47.18	126334	2100	99.986	0.1721	0.1854	0.1905	0.2026	27.843

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.346			0.89		0.456

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.514
r_dihedral_angle_3_deg	13.584
r_dihedral_angle_2_deg	7.77
r_lrange_it	7.348
r_lrange_other	7.325
r_dihedral_angle_1_deg	6.669
r_scangle_it	6.123
r_scangle_other	6.123
r_scbond_other	4.314
r_scbond_it	4.311

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.514
r_dihedral_angle_3_deg	13.584
r_dihedral_angle_2_deg	7.77
r_lrange_it	7.348
r_lrange_other	7.325
r_dihedral_angle_1_deg	6.669
r_scangle_it	6.123
r_scangle_other	6.123
r_scbond_other	4.314
r_scbond_it	4.311
r_mcangle_other	3.271
r_mcangle_it	3.267
r_mcbond_other	2.407
r_mcbond_it	2.406
r_angle_refined_deg	1.944
r_angle_other_deg	0.65
r_symmetry_nbd_refined	0.226
r_nbd_refined	0.218
r_nbd_other	0.201
r_symmetry_nbd_other	0.187
r_nbtor_refined	0.177
r_symmetry_xyhbond_nbd_refined	0.177
r_xyhbond_nbd_refined	0.154
r_chiral_restr	0.093
r_symmetry_nbtor_other	0.081
r_dihedral_angle_other_2_deg	0.021
r_bond_refined_d	0.011
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6072
Nucleic Acid Atoms
Solvent Atoms	354
Heterogen Atoms	126

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9UUE | pdb_00009uue