9US7 | pdb_00009us7

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7RED

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.5	293	1.26 M ammonium sulfate, 0.1 M HEPES-NaOH pH 7.5

Crystal Properties
Matthews coefficient	Solvent content
2.63	53.34

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 X 6M		2023-10-10	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SPRING-8 BEAMLINE BL45XU	1.000	SPring-8	BL45XU

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.41	47	100	0.187	0.196	0.059	0.993	9.3	10		49845			10.09

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.41	1.43	100		1.61	1.716	0.584	0.586		8.2

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.41	46.998	49786	2502	99.946	0.131	0.1289	0.1378	0.1597	0.1647	15.389

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.313			-0.836		0.523

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.214
r_lrange_it	11.518
r_lrange_other	10.078
r_dihedral_angle_3_deg	9.418
r_scangle_it	7.198
r_dihedral_angle_1_deg	6.925
r_scangle_other	6.803
r_scbond_it	5.133
r_mcangle_other	4.92
r_mcangle_it	4.909

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.214
r_lrange_it	11.518
r_lrange_other	10.078
r_dihedral_angle_3_deg	9.418
r_scangle_it	7.198
r_dihedral_angle_1_deg	6.925
r_scangle_other	6.803
r_scbond_it	5.133
r_mcangle_other	4.92
r_mcangle_it	4.909
r_scbond_other	4.779
r_rigid_bond_restr	3.959
r_mcbond_it	3.526
r_mcbond_other	3.508
r_angle_refined_deg	1.637
r_angle_other_deg	0.605
r_symmetry_nbd_other	0.197
r_nbd_refined	0.194
r_nbtor_refined	0.183
r_symmetry_xyhbond_nbd_refined	0.171
r_nbd_other	0.156
r_symmetry_nbd_refined	0.143
r_xyhbond_nbd_refined	0.126
r_chiral_restr	0.098
r_symmetry_nbtor_other	0.089
r_bond_refined_d	0.011
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1685
Nucleic Acid Atoms
Solvent Atoms	290
Heterogen Atoms	51

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.