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Klebsiella pneumoniae maltohexaose-producing alpha-amylase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.2 293 8% polyethylene glycol 3000,
4% polyethylene glycol 3350,
40 mM sodium thiocyanate
Crystal Properties Matthews coefficient Solvent content 2.22 44.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.726 α = 90 b = 107.839 β = 97.351 c = 82.361 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 270 2013-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.00 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.899 100 100 0.153 13.4 7.6 101950
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.899 1.93 0.842 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.899 30.682 98768 4923 96.774 0.19 0.1884 0.1959 0.2173 0.223 26.072
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.002 0.007 -0.01 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.261 r_dihedral_angle_3_deg 14.138 r_dihedral_angle_4_deg 13.23 r_dihedral_angle_1_deg 6.729 r_lrange_it 3.305 r_lrange_other 3.28 r_mcangle_it 1.174 r_mcangle_other 1.174 r_angle_refined_deg 1.166 r_angle_other_deg 1.128
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.261 r_dihedral_angle_3_deg 14.138 r_dihedral_angle_4_deg 13.23 r_dihedral_angle_1_deg 6.729 r_lrange_it 3.305 r_lrange_other 3.28 r_mcangle_it 1.174 r_mcangle_other 1.174 r_angle_refined_deg 1.166 r_angle_other_deg 1.128 r_scangle_it 0.899 r_scangle_other 0.899 r_mcbond_it 0.644 r_mcbond_other 0.644 r_scbond_it 0.507 r_scbond_other 0.506 r_nbd_other 0.249 r_symmetry_nbd_refined 0.221 r_nbd_refined 0.177 r_symmetry_nbd_other 0.172 r_nbtor_refined 0.158 r_xyhbond_nbd_refined 0.111 r_symmetry_xyhbond_nbd_refined 0.111 r_metal_ion_refined 0.073 r_symmetry_nbtor_other 0.072 r_chiral_restr 0.04 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10335 Nucleic Acid Atoms Solvent Atoms 858 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing