Experiment: 9TVT

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	COUNTER-DIFFUSION	8.5	293.15	0.1 M Tris pH 8.5 12% PEG 8000 0.2 M AmSO4

Crystal Properties
Matthews coefficient	Solvent content
2.71	54.6

Symmetry
Space Group	C 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2021-11-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	MAX IV BEAMLINE BioMAX	0.9763	MAX IV	BioMAX

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.85	50	99.9	0.128	0.138	0.052	0.998	10.8	7		68147

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.85	2.92		100	1.918	2.068	0.769	0.588		7.1

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.85	49.95	68146	3386	99.916	0.209	0.2063	0.209	0.2617	0.2628	RANDOM	89.655

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.369		-2.42	6.731		-3.936

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.917
r_dihedral_angle_6_deg	12.618
r_lrange_it	11.938
r_lrange_other	11.938
r_mcangle_it	8.931
r_mcangle_other	8.93
r_scangle_it	8.59
r_scangle_other	8.59
r_dihedral_angle_1_deg	7.299
r_dihedral_angle_2_deg	6.042

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.917
r_dihedral_angle_6_deg	12.618
r_lrange_it	11.938
r_lrange_other	11.938
r_mcangle_it	8.931
r_mcangle_other	8.93
r_scangle_it	8.59
r_scangle_other	8.59
r_dihedral_angle_1_deg	7.299
r_dihedral_angle_2_deg	6.042
r_mcbond_it	5.763
r_mcbond_other	5.762
r_scbond_it	5.305
r_scbond_other	5.304
r_angle_refined_deg	1.193
r_angle_other_deg	0.418
r_symmetry_xyhbond_nbd_refined	0.375
r_symmetry_nbd_other	0.196
r_nbd_refined	0.194
r_nbd_other	0.185
r_nbtor_refined	0.179
r_xyhbond_nbd_refined	0.136
r_symmetry_nbd_refined	0.125
r_ncsr_local_group_2	0.106
r_ncsr_local_group_1	0.1
r_ncsr_local_group_5	0.089
r_symmetry_nbtor_other	0.084
r_ncsr_local_group_4	0.08
r_ncsr_local_group_3	0.062
r_chiral_restr	0.056
r_bond_refined_d	0.004
r_gen_planes_refined	0.004
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_symmetry_xyhbond_nbd_other

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	15942
Nucleic Acid Atoms
Solvent Atoms	28
Heterogen Atoms	48

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9TVT | pdb_00009tvt