Experiment: 9TUF

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2OF5	Chain H was used.

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8	290	100 mM Tris pH 8, 25% v/v polyethylene glycol (PEG) 350 MME

Crystal Properties
Matthews coefficient	Solvent content
2	39

Symmetry
Space Group	P 32

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 XE 16M		2023-01-22	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.976223	Diamond	I03

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	52.81	100	0.14	0.148	0.045	0.998	9.6	9		25417			25.5

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.84	99.8		0.599		8.4

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.8	52.8	25393	1182	99.98	0.183	0.1818	0.1817	0.2115	0.211	RANDOM	30.119

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.302	0.151		0.302		-0.98

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.712
r_dihedral_angle_3_deg	12.135
r_dihedral_angle_2_deg	8.186
r_dihedral_angle_1_deg	5.823
r_lrange_it	5.648
r_lrange_other	5.621
r_scangle_it	4.129
r_scangle_other	4.128
r_scbond_it	2.586
r_scbond_other	2.585

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.712
r_dihedral_angle_3_deg	12.135
r_dihedral_angle_2_deg	8.186
r_dihedral_angle_1_deg	5.823
r_lrange_it	5.648
r_lrange_other	5.621
r_scangle_it	4.129
r_scangle_other	4.128
r_scbond_it	2.586
r_scbond_other	2.585
r_mcangle_it	2.205
r_mcangle_other	2.204
r_mcbond_it	1.508
r_mcbond_other	1.508
r_angle_refined_deg	0.926
r_angle_other_deg	0.395
r_nbd_refined	0.219
r_nbd_other	0.175
r_symmetry_nbd_other	0.17
r_nbtor_refined	0.161
r_symmetry_nbd_refined	0.14
r_symmetry_xyhbond_nbd_refined	0.139
r_xyhbond_nbd_refined	0.118
r_ncsr_local_group_2	0.093
r_ncsr_local_group_1	0.086
r_ncsr_local_group_3	0.086
r_symmetry_nbtor_other	0.061
r_chiral_restr	0.053
r_bond_refined_d	0.012
r_bond_other_d	0.004
r_gen_planes_refined	0.002
r_gen_planes_other

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2300
Nucleic Acid Atoms
Solvent Atoms	97
Heterogen Atoms

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9TUF | pdb_00009tuf