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First six HAMP domains of a soluble histidine kinase from Myxococcus xanthus fused to a GCN4 adaptor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9TRJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 294 12% PEG 20000, 0.1 M MES pH 6.5
Crystal Properties Matthews coefficient Solvent content 1.99 38.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.76 α = 90 b = 105.21 β = 90 c = 194.84 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2011-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.849 38.97 98.1 0.08 0.999 11.16 3.58 103844
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.849 1.96 93.1 0.606 0.785 1.66 3.26
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.849 38.97 97435 5129 96.88 0.20282 0.20063 0.2088 0.24408 0.2518 RANDOM 30.661
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 0.81 -2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.704 r_dihedral_angle_4_deg 15.811 r_dihedral_angle_3_deg 13.863 r_long_range_B_refined 7.317 r_long_range_B_other 7.203 r_dihedral_angle_1_deg 4.915 r_scangle_other 2.786 r_scbond_it 1.78 r_scbond_other 1.78 r_angle_refined_deg 1.557
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.704 r_dihedral_angle_4_deg 15.811 r_dihedral_angle_3_deg 13.863 r_long_range_B_refined 7.317 r_long_range_B_other 7.203 r_dihedral_angle_1_deg 4.915 r_scangle_other 2.786 r_scbond_it 1.78 r_scbond_other 1.78 r_angle_refined_deg 1.557 r_angle_other_deg 1.522 r_mcangle_it 1.415 r_mcangle_other 1.415 r_mcbond_it 0.948 r_mcbond_other 0.948 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_bond_other_d 0.008 r_gen_planes_refined 0.008 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8644 Nucleic Acid Atoms Solvent Atoms 1179 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling MOLREP phasing