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CO dehydrogenase 2 variant A559W V610H
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3B51
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291.15 PEG2000MME
Crystal Properties Matthews coefficient Solvent content 2.07 40.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112 α = 90 b = 74.98 β = 111.15 c = 70.82 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2025-07-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.41 40.71 99.8 0.999 12.7 6.7 104990
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.41 1.5 0.421
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.41 40.745 104990 2100 99.929 0.155 0.1547 0.1541 0.184 0.185 RANDOM 15.566
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.125 0.043 -0.775 0.668
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.513 r_dihedral_angle_1_deg 13.79 r_dihedral_angle_3_deg 13.442 r_lrange_it 5.581 r_lrange_other 5.562 r_scangle_other 4.811 r_scangle_it 4.803 r_scbond_it 3.314 r_scbond_other 3.286 r_mcangle_other 2.651
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.513 r_dihedral_angle_1_deg 13.79 r_dihedral_angle_3_deg 13.442 r_lrange_it 5.581 r_lrange_other 5.562 r_scangle_other 4.811 r_scangle_it 4.803 r_scbond_it 3.314 r_scbond_other 3.286 r_mcangle_other 2.651 r_mcangle_it 2.647 r_angle_refined_deg 2.231 r_mcbond_it 1.881 r_mcbond_other 1.876 r_angle_other_deg 0.573 r_chiral_restr 0.456 r_symmetry_xyhbond_nbd_other 0.232 r_nbd_refined 0.231 r_symmetry_nbd_other 0.185 r_xyhbond_nbd_refined 0.172 r_nbtor_refined 0.169 r_nbd_other 0.162 r_symmetry_nbd_refined 0.156 r_symmetry_xyhbond_nbd_refined 0.114 r_symmetry_metal_ion_refined 0.111 r_metal_ion_refined 0.105 r_symmetry_nbtor_other 0.075 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4682 Nucleic Acid Atoms Solvent Atoms 302 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement PHASER phasing XSCALE data scaling