9TKJ | pdb_00009tkj

TAF15 amyloid filament fold D


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg13.374
r_lrange_it13.278
r_lrange_other13.27
r_dihedral_angle_3_deg9.886
r_scangle_it9.787
r_scangle_other9.777
r_dihedral_angle_1_deg6.811
r_scbond_it6.049
r_scbond_other6.04
r_mcangle_other5.034
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg13.374
r_lrange_it13.278
r_lrange_other13.27
r_dihedral_angle_3_deg9.886
r_scangle_it9.787
r_scangle_other9.777
r_dihedral_angle_1_deg6.811
r_scbond_it6.049
r_scbond_other6.04
r_mcangle_other5.034
r_mcangle_it5.032
r_mcbond_it3.679
r_mcbond_other3.605
r_angle_refined_deg1.046
r_angle_other_deg0.414
r_nbd_other0.219
r_symmetry_nbd_other0.206
r_nbtor_refined0.19
r_nbd_refined0.183
r_xyhbond_nbd_refined0.156
r_symmetry_nbd_refined0.127
r_symmetry_xyhbond_nbd_refined0.081
r_symmetry_nbtor_other0.08
r_chiral_restr0.061
r_bond_refined_d0.003
r_gen_planes_refined0.003
r_gen_planes_other0.001
r_bond_other_d
Sample
TATA-binding protein-associated factor 2N
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles911798
Reported Resolution (Å)2.21
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC1
Axial Rise4.77
Angular Rotation-1.15
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)1000
Maximum Defocus (nm)2500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION5.0.1
RECONSTRUCTIONRELION5.0.1
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION1111556