9TIA | pdb_00009tia

G14 variant of 57aBi scaffold crystallized in P6422

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	9THX

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.5	291	28% (v/v) PEG 400, 0.2 M CaCl2, 0.1 M HEPES

Crystal Properties
Matthews coefficient	Solvent content
2.4	48.69

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 71.976	α = 90
b = 71.976	β = 90
c = 108.713	γ = 120

Symmetry
Space Group	P 64 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	Bruker PHOTON II		2016-08-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	LIQUID ANODE	BRUKER METALJET	1.3418

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.07	41.001	78.2	0.204	0.033	0.999	26.4	37.9		8369

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.07	2.21	22.9		3.503	0.681	0.522		26.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.07	41.001	8356	422	78.05	0.225	0.225	0.2215	0.2285	0.2869	0.29	RANDOM	45.973

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.09	0.045		0.09		-0.291

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	17.501
r_dihedral_angle_6_deg	13.49
r_lrange_other	10.586
r_lrange_it	10.581
r_dihedral_angle_2_deg	10.008
r_scangle_it	8.089
r_scangle_other	8.084
r_dihedral_angle_1_deg	7.477
r_mcangle_it	6.531
r_mcangle_other	6.527
r_scbond_it	5.284
r_scbond_other	5.279
r_mcbond_it	4.298
r_mcbond_other	4.295
r_angle_refined_deg	1.848
r_angle_other_deg	0.598
r_nbd_refined	0.219
r_nbtor_refined	0.197
r_symmetry_nbd_other	0.195
r_symmetry_xyhbond_nbd_refined	0.193
r_nbd_other	0.174
r_xyhbond_nbd_refined	0.171
r_symmetry_nbd_refined	0.158
r_symmetry_nbtor_other	0.088
r_chiral_restr	0.083
r_bond_refined_d	0.008
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1041
Nucleic Acid Atoms
Solvent Atoms	40
Heterogen Atoms	11

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
STARANISO	data scaling
PHASER	phasing