9THP | pdb_00009thp

TAF14 amyloid filament fold B variant 3


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg13.191
r_dihedral_angle_3_deg8.986
r_lrange_other7.644
r_lrange_it7.633
r_dihedral_angle_1_deg6.516
r_scangle_it6.026
r_scangle_other6.02
r_scbond_it3.72
r_scbond_other3.712
r_mcangle_it3.232
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg13.191
r_dihedral_angle_3_deg8.986
r_lrange_other7.644
r_lrange_it7.633
r_dihedral_angle_1_deg6.516
r_scangle_it6.026
r_scangle_other6.02
r_scbond_it3.72
r_scbond_other3.712
r_mcangle_it3.232
r_mcangle_other3.23
r_mcbond_it2.146
r_mcbond_other2.102
r_angle_refined_deg1.15
r_angle_other_deg0.475
r_nbd_other0.223
r_nbd_refined0.194
r_symmetry_nbd_other0.189
r_nbtor_refined0.188
r_symmetry_nbd_refined0.14
r_xyhbond_nbd_refined0.127
r_symmetry_xyhbond_nbd_refined0.099
r_symmetry_nbtor_other0.076
r_chiral_restr0.072
r_gen_planes_refined0.004
r_bond_refined_d0.003
r_gen_planes_other0.001
r_bond_other_d
Sample
TATA-binding protein-associated factor 2N
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles165317
Reported Resolution (Å)1.98
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC1
Axial Rise4.79
Angular Rotation-1.51
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeTFS FALCON 4i (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)500
Maximum Defocus (nm)1500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION5.0.1
RECONSTRUCTIONRELION5.0.1
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION347868