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Structure of an LPMO expressed in E.coli (LsAA9A) merged from multiple crystals with an average dose of 88.5kGy at room temperature
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7PYL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 278 25 mM sodium acetate pH 5.5, 20 mM sodium chloride
Crystal Properties Matthews coefficient Solvent content 2.68 54.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.66 α = 90 b = 49.66 β = 90 c = 109.61 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS EIGER X 9M 2024-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE MicroMAX 0.9544 MAX IV MicroMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 49.66 93.6 0.963 3.35 2.8 21161
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.98 91.9 0.401 2.87
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.85 49.66 21161 1102 93.529 0.181 0.1792 0.1896 0.2122 0.2164 18.776
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.343 0.343 -0.685
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.253 r_dihedral_angle_4_deg 12.82 r_dihedral_angle_3_deg 10.554 r_dihedral_angle_1_deg 6.722 r_lrange_it 4.261 r_lrange_other 4.127 r_scangle_it 2.527 r_scangle_other 2.514 r_mcangle_other 1.948 r_mcangle_it 1.943
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.253 r_dihedral_angle_4_deg 12.82 r_dihedral_angle_3_deg 10.554 r_dihedral_angle_1_deg 6.722 r_lrange_it 4.261 r_lrange_other 4.127 r_scangle_it 2.527 r_scangle_other 2.514 r_mcangle_other 1.948 r_mcangle_it 1.943 r_scbond_it 1.612 r_scbond_other 1.541 r_angle_refined_deg 1.467 r_angle_other_deg 1.29 r_mcbond_it 1.216 r_mcbond_other 1.205 r_nbd_refined 0.189 r_symmetry_nbd_other 0.183 r_nbd_other 0.182 r_nbtor_refined 0.159 r_symmetry_xyhbond_nbd_refined 0.149 r_xyhbond_nbd_refined 0.137 r_symmetry_nbtor_other 0.077 r_symmetry_nbd_refined 0.065 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_metal_ion_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1787 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling FFT phasing