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From KRASG12D to pan-KRAS inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 0.1M sodium acetate pH 5.5, 30-35% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.22 44.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.921 α = 90 b = 53.903 β = 90 c = 88.792 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL RIGAKU HyPix-Arc 150 2024-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 20.53 99.8 0.059 18 7.7 48484
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.33 0.648
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.3 20.53 45441 2352 99.67 0.17959 0.17863 0.1876 0.19766 0.2054 RANDOM 17.024
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -0.22 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.071 r_dihedral_angle_4_deg 19.616 r_dihedral_angle_1_deg 15.975 r_dihedral_angle_3_deg 13.972 r_long_range_B_refined 4.749 r_long_range_B_other 4.643 r_scbond_other 1.657 r_scbond_it 1.656 r_angle_refined_deg 1.579 r_mcbond_it 0.994
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.071 r_dihedral_angle_4_deg 19.616 r_dihedral_angle_1_deg 15.975 r_dihedral_angle_3_deg 13.972 r_long_range_B_refined 4.749 r_long_range_B_other 4.643 r_scbond_other 1.657 r_scbond_it 1.656 r_angle_refined_deg 1.579 r_mcbond_it 0.994 r_mcbond_other 0.993 r_angle_other_deg 0.524 r_chiral_restr 0.072 r_bond_refined_d 0.01 r_bond_other_d 0.001 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1366 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling REFMAC phasing