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From KRASG12D to pan-KRAS inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 293 0.1M NaH2PO4/Na2HPO4 pH 9, 30.0% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.45 49.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.683 α = 90 b = 94.683 β = 90 c = 120.648 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 R 1M 2020-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 40.25 93.4 0.079 23.04 10 27746
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.759 0.59 1.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.65 40.25 20419 1053 84.33 0.17849 0.17664 0.1875 0.21214 0.2233 RANDOM 32.538
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.08 0.17 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.235 r_dihedral_angle_3_deg 16.255 r_dihedral_angle_4_deg 13.788 r_dihedral_angle_1_deg 11.563 r_long_range_B_refined 5.859 r_long_range_B_other 5.808 r_scbond_it 2.616 r_scbond_other 2.614 r_mcbond_it 1.926 r_mcbond_other 1.925
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.235 r_dihedral_angle_3_deg 16.255 r_dihedral_angle_4_deg 13.788 r_dihedral_angle_1_deg 11.563 r_long_range_B_refined 5.859 r_long_range_B_other 5.808 r_scbond_it 2.616 r_scbond_other 2.614 r_mcbond_it 1.926 r_mcbond_other 1.925 r_angle_refined_deg 1.455 r_angle_other_deg 0.488 r_chiral_restr 0.06 r_bond_refined_d 0.01 r_bond_other_d 0.002 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1358 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling REFMAC phasing