9TBL | pdb_00009tbl

SSX Lysozyme at 100K

X-RAY DIFFRACTION

---

Serial Crystallography (SX)

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5NJM

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE		293	19.04% NaCl, 5.44% PEG 8,000, 68mM Na Acetate pH 3.0

Crystal Properties
Matthews coefficient	Solvent content
1.95	36.84

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 77.16	α = 90
b = 77.16	β = 90
c = 37.5	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X CdTe 16M		2025-11-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	MAX IV BEAMLINE BioMAX	0.7293	MAX IV	BioMAX

Serial Crystallography

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1		fixed target

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.75	22.06	100	0.996589	19.88	339		11932

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.75	1.93			0.835718

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.75	22.06	11897	592	99.924	0.167	0.165	0.1649	0.2113	0.2121	RANDOM	31.942

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.014			0.014		-0.027

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.773
r_dihedral_angle_3_deg	13.305
r_dihedral_angle_2_deg	13.111
r_lrange_it	6.75
r_dihedral_angle_1_deg	6.709
r_lrange_other	6.64
r_scangle_it	5.745
r_scangle_other	5.741
r_scbond_it	3.96
r_scbond_other	3.957
r_mcangle_it	3.417
r_mcangle_other	3.417
r_mcbond_it	2.686
r_mcbond_other	2.673
r_angle_refined_deg	1.973
r_angle_other_deg	0.804
r_xyhbond_nbd_refined	0.234
r_nbd_refined	0.223
r_symmetry_nbd_refined	0.178
r_nbtor_refined	0.171
r_symmetry_nbd_other	0.168
r_nbd_other	0.135
r_chiral_restr	0.1
r_metal_ion_refined	0.094
r_symmetry_xyhbond_nbd_refined	0.089
r_symmetry_nbtor_other	0.073
r_bond_refined_d	0.011
r_gen_planes_refined	0.011
r_gen_planes_other	0.004
r_bond_other_d	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1001
Nucleic Acid Atoms
Solvent Atoms	104
Heterogen Atoms	10

Software

Software
Software Name	Purpose
REFMAC	refinement
CrystFEL	data reduction
CrystFEL	data scaling
PHASER	phasing