Experiment: 9T4L

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.5	289	Protein: 20mg/mL IP6: 10mM Precipitant condition: 25% PEG 3350, 0.1M Bis-Tris pH 5.5, 0.2M NaCl Ratio: 1:2

Crystal Properties
Matthews coefficient	Solvent content
2.6	53.4

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2024-05-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97926	ALBA	XALOC

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.13	50.1	94.4	0.02	0.999	16.72	11.8		51069			13.8

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.13	1.23			0.38	0.67	1.6

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	1.13	50.1	51069	2564	76.255	0.175	0.1731	0.1797	0.2035	0.2077	15.848

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.062			-0.076		0.014

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.467
r_dihedral_angle_3_deg	13.569
r_dihedral_angle_2_deg	10.583
r_lrange_it	7.24
r_lrange_other	7.026
r_dihedral_angle_1_deg	6.339
r_scangle_other	4.942
r_scangle_it	4.931
r_scbond_other	3.255
r_scbond_it	3.211

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.467
r_dihedral_angle_3_deg	13.569
r_dihedral_angle_2_deg	10.583
r_lrange_it	7.24
r_lrange_other	7.026
r_dihedral_angle_1_deg	6.339
r_scangle_other	4.942
r_scangle_it	4.931
r_scbond_other	3.255
r_scbond_it	3.211
r_mcangle_it	2.428
r_mcangle_other	2.426
r_angle_refined_deg	2.096
r_mcbond_it	1.633
r_mcbond_other	1.626
r_angle_other_deg	0.7
r_metal_ion_refined	0.424
r_nbd_refined	0.217
r_symmetry_nbd_refined	0.209
r_xyhbond_nbd_refined	0.194
r_symmetry_nbd_other	0.193
r_nbtor_refined	0.182
r_nbd_other	0.176
r_symmetry_xyhbond_nbd_refined	0.173
r_chiral_restr	0.11
r_symmetry_nbtor_other	0.086
r_bond_refined_d	0.013
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1209
Nucleic Acid Atoms
Solvent Atoms	239
Heterogen Atoms	42

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9T4L | pdb_00009t4l