Experiment: 9T4K

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5	289	Protein: 19.5mg/mL IP6: 10mM Precipitant condition: 32% PEG 6K, 0.1M NaOAc pH 5, 0.2M LiCl, 1mM MgCl2 Ratio: 1:1

Crystal Properties
Matthews coefficient	Solvent content
2.6	53.4

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2023-04-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-1	0.88560	ESRF	ID23-1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.39	39.35	94.4	0.05	0.99	9.5	13.2		26701			15.8

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.394	1.492			0.81	0.62	1.4

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	1.394	39.35	26071	1283	72.532	0.189	0.1872	0.1871	0.2271	0.2278	19.011

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.005			0.044		-0.05

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.393
r_dihedral_angle_3_deg	13.539
r_dihedral_angle_2_deg	11.806
r_lrange_it	8.258
r_lrange_other	8.035
r_dihedral_angle_1_deg	7.272
r_scangle_other	5.591
r_scangle_it	5.585
r_mcangle_it	3.796
r_mcangle_other	3.794

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.393
r_dihedral_angle_3_deg	13.539
r_dihedral_angle_2_deg	11.806
r_lrange_it	8.258
r_lrange_other	8.035
r_dihedral_angle_1_deg	7.272
r_scangle_other	5.591
r_scangle_it	5.585
r_mcangle_it	3.796
r_mcangle_other	3.794
r_scbond_other	3.446
r_scbond_it	3.444
r_mcbond_it	2.347
r_mcbond_other	2.347
r_angle_refined_deg	1.945
r_angle_other_deg	0.683
r_xyhbond_nbd_refined	0.226
r_symmetry_nbd_refined	0.22
r_nbd_refined	0.213
r_symmetry_xyhbond_nbd_refined	0.202
r_symmetry_nbd_other	0.195
r_nbtor_refined	0.18
r_metal_ion_refined	0.168
r_nbd_other	0.164
r_chiral_restr	0.104
r_symmetry_nbtor_other	0.086
r_bond_refined_d	0.011
r_gen_planes_refined	0.008
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1200
Nucleic Acid Atoms
Solvent Atoms	187
Heterogen Atoms	53

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9T4K | pdb_00009t4k