Experiment: 9T4J

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5	289	Protein: 20mg/mL IP6: 5mM Precipitant condition: 26% PEG 6K 0.1M, NaOAc pH 5, 0.2M LiCl Ratio: 1:1

Crystal Properties
Matthews coefficient	Solvent content
2.6	53.4

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2022-03-12	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97926	ALBA	XALOC

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.324	79.23	98.7	0.02	0.99	19.1	12.1		41338			17.2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.324	1.35			0.265	0.85	2.2

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	1.324	50.303	41269	2087	98.654	0.178	0.1763	0.1844	0.2056	0.2126	20.096

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.112			-0.479		1.591

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.183
r_dihedral_angle_3_deg	13.075
r_dihedral_angle_2_deg	10.577
r_lrange_it	8.848
r_lrange_other	8.84
r_dihedral_angle_1_deg	6.794
r_scangle_it	5.73
r_scangle_other	5.727
r_scbond_it	3.908
r_scbond_other	3.905

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.183
r_dihedral_angle_3_deg	13.075
r_dihedral_angle_2_deg	10.577
r_lrange_it	8.848
r_lrange_other	8.84
r_dihedral_angle_1_deg	6.794
r_scangle_it	5.73
r_scangle_other	5.727
r_scbond_it	3.908
r_scbond_other	3.905
r_mcangle_it	3.122
r_mcangle_other	3.12
r_angle_refined_deg	2.266
r_mcbond_it	2.125
r_mcbond_other	2.12
r_angle_other_deg	0.771
r_symmetry_nbd_refined	0.359
r_nbd_other	0.265
r_xyhbond_nbd_refined	0.254
r_symmetry_xyhbond_nbd_refined	0.236
r_nbd_refined	0.216
r_symmetry_nbd_other	0.201
r_nbtor_refined	0.183
r_metal_ion_refined	0.165
r_chiral_restr	0.114
r_symmetry_nbtor_other	0.087
r_symmetry_xyhbond_nbd_other	0.048
r_bond_refined_d	0.013
r_gen_planes_refined	0.012
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1186
Nucleic Acid Atoms
Solvent Atoms	183
Heterogen Atoms	52

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9T4J | pdb_00009t4j