Experiment: 9T4H

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5	289	Protein: 20mg/mL IP6: 10mM Precipitant conditions: 30% PEG 6K, 0.1M NaOAc pH 5, 0.2M LiCl, 1mM MgCl2 Ratio: 2:1

Crystal Properties
Matthews coefficient	Solvent content
2.6	53.5

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2023-05-05	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-2	0.87313	ESRF	ID23-2

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.24	50.08	88	0.02	0.99	12.78	11.4		33878			16

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.24	1.37			0.43	0.78	1.57

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	1.24	50.077	33878	1768	66.498	0.171	0.169	0.1688	0.206	0.2058	17.5

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.142			-0.036		0.178

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.007
r_dihedral_angle_3_deg	12.429
r_dihedral_angle_2_deg	10.029
r_lrange_it	7.915
r_lrange_other	7.743
r_dihedral_angle_1_deg	6.515
r_scangle_it	5.481
r_scangle_other	5.481
r_scbond_it	3.441
r_scbond_other	3.439

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.007
r_dihedral_angle_3_deg	12.429
r_dihedral_angle_2_deg	10.029
r_lrange_it	7.915
r_lrange_other	7.743
r_dihedral_angle_1_deg	6.515
r_scangle_it	5.481
r_scangle_other	5.481
r_scbond_it	3.441
r_scbond_other	3.439
r_mcangle_it	3.042
r_mcangle_other	3.04
r_angle_refined_deg	2.033
r_mcbond_it	2.029
r_mcbond_other	2.028
r_angle_other_deg	0.677
r_nbd_other	0.224
r_symmetry_xyhbond_nbd_refined	0.223
r_nbd_refined	0.207
r_symmetry_nbd_refined	0.191
r_symmetry_nbd_other	0.189
r_xyhbond_nbd_refined	0.189
r_nbtor_refined	0.174
r_chiral_restr	0.098
r_symmetry_nbtor_other	0.084
r_bond_refined_d	0.011
r_gen_planes_refined	0.01
r_gen_planes_other	0.003
r_bond_other_d	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1196
Nucleic Acid Atoms
Solvent Atoms	228
Heterogen Atoms	48

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9T4H | pdb_00009t4h