Experiment: 9T4G

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5	289	Protein: 20 mg/mL IP6: 10 mM Precipitant condition: 28% PEG 6K, 0.1M NaOAc pH 5, 0.2M LiCl and 1mM MgCl2 Ratio: 1:1

Crystal Properties
Matthews coefficient	Solvent content
2.6	53.5

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2023-05-05	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-2	0.87313	ESRF	ID23-2

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.28	50.54	91.5	0.02	0.99	14.7	12.7		38659			15.8

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.28	1.37			0.3	0.8	1.4

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	1.28	50.54	38659	1938	80.978	0.17	0.1687	0.1683	0.1923	0.1919	16.934

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.084			-0.07		0.154

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.775
r_dihedral_angle_3_deg	12.873
r_dihedral_angle_2_deg	11.745
r_lrange_it	7.793
r_lrange_other	7.509
r_dihedral_angle_1_deg	6.59
r_scangle_other	5.648
r_scangle_it	5.631
r_scbond_it	3.522
r_scbond_other	3.501

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.775
r_dihedral_angle_3_deg	12.873
r_dihedral_angle_2_deg	11.745
r_lrange_it	7.793
r_lrange_other	7.509
r_dihedral_angle_1_deg	6.59
r_scangle_other	5.648
r_scangle_it	5.631
r_scbond_it	3.522
r_scbond_other	3.501
r_mcangle_it	3.14
r_mcangle_other	3.138
r_angle_refined_deg	1.997
r_mcbond_it	1.996
r_mcbond_other	1.995
r_angle_other_deg	0.665
r_symmetry_nbd_refined	0.273
r_metal_ion_refined	0.241
r_nbd_other	0.229
r_nbd_refined	0.213
r_symmetry_xyhbond_nbd_refined	0.212
r_xyhbond_nbd_refined	0.199
r_symmetry_nbd_other	0.196
r_symmetry_xyhbond_nbd_other	0.179
r_nbtor_refined	0.171
r_chiral_restr	0.099
r_symmetry_nbtor_other	0.079
r_bond_refined_d	0.012
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1202
Nucleic Acid Atoms
Solvent Atoms	262
Heterogen Atoms	47

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9T4G | pdb_00009t4g