Experiment: 9T4C

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5	289	Protein: 20mg/mL PCP-IP8: 10mM Precipitant condition: 26% PEG 6K, 0.1M NaOAc pH 5, 0.2M LiCl, 1mM MnCl2 Ratio: 1:1

Crystal Properties
Matthews coefficient	Solvent content
2.6	53.4

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2022-03-12	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97926	ALBA	XALOC

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.21	50.121	91.3	0.024	0.997	15.8	12.3		42464			15.5

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.21	1.3			0.47	0.451	1.4

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	1.213	50.121	42464	2128	78.318	0.164	0.1631	0.1724	0.1887	0.1915	18.856

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.09			0.002		0.088

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.699
r_dihedral_angle_3_deg	13.244
r_lrange_it	10.48
r_dihedral_angle_2_deg	9.792
r_lrange_other	9.546
r_dihedral_angle_1_deg	6.832
r_scangle_it	5.8
r_scangle_other	5.703
r_scbond_it	3.678
r_scbond_other	3.608

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.699
r_dihedral_angle_3_deg	13.244
r_lrange_it	10.48
r_dihedral_angle_2_deg	9.792
r_lrange_other	9.546
r_dihedral_angle_1_deg	6.832
r_scangle_it	5.8
r_scangle_other	5.703
r_scbond_it	3.678
r_scbond_other	3.608
r_mcangle_it	3.024
r_mcangle_other	3.022
r_angle_refined_deg	2.105
r_mcbond_it	2.012
r_mcbond_other	2.011
r_angle_other_deg	0.704
r_nbd_refined	0.258
r_symmetry_nbd_refined	0.233
r_xyhbond_nbd_refined	0.215
r_symmetry_xyhbond_nbd_refined	0.213
r_symmetry_nbd_other	0.198
r_nbd_other	0.19
r_nbtor_refined	0.18
r_chiral_restr	0.106
r_symmetry_xyhbond_nbd_other	0.088
r_symmetry_nbtor_other	0.085
r_metal_ion_refined	0.055
r_bond_refined_d	0.013
r_gen_planes_refined	0.01
r_gen_planes_other	0.003
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1186
Nucleic Acid Atoms
Solvent Atoms	193
Heterogen Atoms	56

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9T4C | pdb_00009t4c