Experiment: 9T4B

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5	289	Protein: 21.5mg/mL PCP-IP8: 10mM Precipitant condition: 26% PEG 6K, 0.1M NaOAc pH 5, 0.2M LiCl, 1mM MgCl2 Ratio: 1:1

Crystal Properties
Matthews coefficient	Solvent content
2.6	52.7

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X 9M		2023-02-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID30B	0.87313	ESRF	ID30B

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.63	78.54	93.7	0.03	0.998	13	11.8		21427			26.6

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.63	1.66			0.727	0.519	1.2

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	THROUGHOUT	1.63	50.182	21377	1063	93.595	0.185	0.1831	0.1961	0.2183	0.2343	RANDOM	31.68

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.994			-1.399		2.394

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.007
r_dihedral_angle_3_deg	12.455
r_lrange_it	11.592
r_lrange_other	11.59
r_scangle_it	9.281
r_scangle_other	9.277
r_dihedral_angle_2_deg	9.268
r_dihedral_angle_1_deg	6.378
r_scbond_it	6.05
r_scbond_other	6.047

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.007
r_dihedral_angle_3_deg	12.455
r_lrange_it	11.592
r_lrange_other	11.59
r_scangle_it	9.281
r_scangle_other	9.277
r_dihedral_angle_2_deg	9.268
r_dihedral_angle_1_deg	6.378
r_scbond_it	6.05
r_scbond_other	6.047
r_mcangle_it	3.699
r_mcangle_other	3.698
r_mcbond_it	2.714
r_mcbond_other	2.713
r_angle_refined_deg	1.919
r_angle_other_deg	0.641
r_symmetry_nbd_refined	0.264
r_symmetry_xyhbond_nbd_refined	0.24
r_nbd_other	0.233
r_nbd_refined	0.206
r_xyhbond_nbd_refined	0.197
r_symmetry_nbd_other	0.19
r_symmetry_xyhbond_nbd_other	0.179
r_nbtor_refined	0.178
r_chiral_restr	0.095
r_symmetry_nbtor_other	0.085
r_metal_ion_refined	0.054
r_bond_refined_d	0.009
r_gen_planes_refined	0.008
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1141
Nucleic Acid Atoms
Solvent Atoms	109
Heterogen Atoms	53

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9T4B | pdb_00009t4b