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Cryo-EM structure of a human KEOPS sub-complex bound to tRNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6WQX experimental model PDB 6GWJ experimental model PDB 6UGG
Sample human KEOPS sub-complex bound to tRNA
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Blotting force 2, blotting time 8 S
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 121547 Reported Resolution (Å) 4.22 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (6WQX, 6GWJ, 6UGG) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type TFS FALCON 4i (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 165000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.2.1 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4 CTF CORRECTION cryoSPARC 4.2.1 MODEL FITTING PHENIX 1.20.1_4487 MODEL FITTING UCSF Chimera MODEL FITTING NAMD 1.0 MODEL REFINEMENT PHENIX 1.20.1_4487 INITIAL EULER ASSIGNMENT cryoSPARC 4.2.1 FINAL EULER ASSIGNMENT cryoSPARC 4.2.1 RECONSTRUCTION cryoSPARC 4.2.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION