9T27 | pdb_00009t27

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	9SX4

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		291	0.1 M Bis-Tris pH 5.5 and 7.0 at 25% to PEG 3350.

Crystal Properties
Matthews coefficient	Solvent content
2.82	56.32

Symmetry
Space Group	P 1 21 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2022-10-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97926	ALBA	XALOC

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.789	61.128	98.96	0.9983	13.158	6.85		96907

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.789	1.82			0.5705

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.789	61	96907	4820	98.957	0.183	0.1819	0.1827	0.2078	0.2088	28.907

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.198		-0.178	-1.114		-0.032

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.31
r_dihedral_angle_3_deg	12.386
r_dihedral_angle_1_deg	6.764
r_lrange_it	6.489
r_scangle_it	4.988
r_dihedral_angle_2_deg	4.922
r_scbond_it	3.315
r_mcangle_it	2.893
r_mcbond_it	1.988
r_angle_refined_deg	1.515

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.31
r_dihedral_angle_3_deg	12.386
r_dihedral_angle_1_deg	6.764
r_lrange_it	6.489
r_scangle_it	4.988
r_dihedral_angle_2_deg	4.922
r_scbond_it	3.315
r_mcangle_it	2.893
r_mcbond_it	1.988
r_angle_refined_deg	1.515
r_nbtor_refined	0.314
r_nbd_refined	0.214
r_symmetry_xyhbond_nbd_refined	0.158
r_symmetry_nbd_refined	0.149
r_metal_ion_refined	0.139
r_xyhbond_nbd_refined	0.12
r_chiral_restr	0.109
r_gen_planes_refined	0.007
r_bond_refined_d	0.006

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6544
Nucleic Acid Atoms
Solvent Atoms	333
Heterogen Atoms	96

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.