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Plant HSL3/NUT receptor in complex with disulfide-stabilized CTNIP4/SCREW2 peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold AF-Q9XGZ2-F1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291.15 0.1 M citric acid pH 4.0, 0.2 M ammonium acetate 25 % (w/v), PEG 3,350
Crystal Properties Matthews coefficient Solvent content 2.89 59.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.699 α = 90 b = 131.099 β = 90 c = 220.991 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M 2025-09-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.96770 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 110.5 98 0.067 0.087 0.051 0.985 9.1 1.8 46047
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.12 2.18 97.7 0.64 0.878 0.484 0.773 1.2 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.122 110.5 45998 2312 97.602 0.19 0.1877 0.1839 0.2322 0.2312 57.365
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.817 3.429 -1.613
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.512 r_dihedral_angle_6_deg 15.884 r_dihedral_angle_2_deg 15.695 r_lrange_it 9.494 r_lrange_other 9.487 r_scangle_it 7.777 r_scangle_other 7.776 r_dihedral_angle_1_deg 5.964 r_scbond_it 5.367 r_scbond_other 5.366
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.512 r_dihedral_angle_6_deg 15.884 r_dihedral_angle_2_deg 15.695 r_lrange_it 9.494 r_lrange_other 9.487 r_scangle_it 7.777 r_scangle_other 7.776 r_dihedral_angle_1_deg 5.964 r_scbond_it 5.367 r_scbond_other 5.366 r_mcangle_it 4.55 r_mcangle_other 4.55 r_mcbond_it 3.537 r_mcbond_other 3.528 r_angle_refined_deg 2.061 r_angle_other_deg 0.703 r_nbd_other 0.227 r_symmetry_nbd_refined 0.219 r_nbd_refined 0.208 r_symmetry_nbd_other 0.202 r_symmetry_xyhbond_nbd_refined 0.18 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.169 r_symmetry_xyhbond_nbd_other 0.148 r_chiral_restr 0.105 r_symmetry_nbtor_other 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4721 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 224
Software Software Software Name Purpose REFMAC refinement Coot model building PHENIX phasing Aimless data scaling