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Crystal structure of phenylalanine hydroxylase (PAH) with Belinostat
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ANP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 PIPES
PEG 2000
Crystal Properties Matthews coefficient Solvent content 3.07 59.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.653 α = 90 b = 108.103 β = 90 c = 123.971 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.96863 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 61.99 100 0.081 0.999 14.9 7.7 33069
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 2.04 1.155 0.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.94 56.18 31846 1192 99.99 0.16695 0.1656 0.1747 0.20318 0.2142 RANDOM 37.036
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 1.76 -1.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.977 r_dihedral_angle_4_deg 18.375 r_dihedral_angle_3_deg 15.331 r_long_range_B_refined 7.493 r_long_range_B_other 7.483 r_dihedral_angle_1_deg 6.84 r_scangle_other 5.835 r_scbond_it 3.902 r_scbond_other 3.901 r_mcangle_it 3.536
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.977 r_dihedral_angle_4_deg 18.375 r_dihedral_angle_3_deg 15.331 r_long_range_B_refined 7.493 r_long_range_B_other 7.483 r_dihedral_angle_1_deg 6.84 r_scangle_other 5.835 r_scbond_it 3.902 r_scbond_other 3.901 r_mcangle_it 3.536 r_mcangle_other 3.535 r_mcbond_other 2.54 r_mcbond_it 2.539 r_angle_refined_deg 1.992 r_angle_other_deg 1.545 r_chiral_restr 0.102 r_bond_refined_d 0.017 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2532 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing