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gamma carbonic anhydrase LreCA from Limosilactobacillus reuteri in space group P212121
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold AF-A0A6B3Y2U8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 296 2.0 M ammonium sulfate, 0.1 M HEPES, pH 7.5, 2% v/v PEG 400
Crystal Properties Matthews coefficient Solvent content 2.38 48.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.82 α = 90 b = 90.78 β = 90 c = 117.01 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2025-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.00 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.26 50 91.1 0.101 0.105 0.999 12.07 12 137236
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.26 1.29 82.6 2.917 3.068 0.385 0.86 10.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1.26 50 136782 6725 90.783 0.136 0.1347 0.1351 0.1701 0.1711 20.093
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.408 0.075 0.333
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.291 r_dihedral_angle_4_deg 17.455 r_dihedral_angle_3_deg 13.434 r_rigid_bond_restr 7.754 r_dihedral_angle_1_deg 7.124 r_scangle_it 5.175 r_scangle_other 5.174 r_lrange_it 4.606 r_scbond_it 4.575 r_scbond_other 4.574
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.291 r_dihedral_angle_4_deg 17.455 r_dihedral_angle_3_deg 13.434 r_rigid_bond_restr 7.754 r_dihedral_angle_1_deg 7.124 r_scangle_it 5.175 r_scangle_other 5.174 r_lrange_it 4.606 r_scbond_it 4.575 r_scbond_other 4.574 r_lrange_other 4.529 r_mcangle_other 2.996 r_mcangle_it 2.99 r_mcbond_it 2.546 r_mcbond_other 2.541 r_angle_other_deg 2.465 r_angle_refined_deg 1.979 r_nbd_refined 0.222 r_symmetry_nbd_refined 0.221 r_symmetry_nbd_other 0.19 r_nbd_other 0.186 r_symmetry_xyhbond_nbd_refined 0.185 r_xyhbond_nbd_refined 0.176 r_nbtor_refined 0.16 r_metal_ion_refined 0.132 r_chiral_restr 0.105 r_symmetry_nbtor_other 0.088 r_symmetry_metal_ion_refined 0.05 r_bond_refined_d 0.017 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4053 Nucleic Acid Atoms Solvent Atoms 325 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing