9SSN | pdb_00009ssn

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6Y2E

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.1 M SPG, pH6.0, 25% w/v, PEG 1500

Crystal Properties
Matthews coefficient	Solvent content
2.79	55.84

Symmetry
Space Group	C 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2023-11-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PETRA III, DESY BEAMLINE P11	1.0332	PETRA III, DESY	P11

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.5	43.242	97.05	1	28.7	3.9		56677

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.5	1.554			0.976	4.29

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.5	43.242	56673	2851	97.058	0.18	0.1789	0.1886	0.2042	0.2143	20.194

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.84		-0.821	2.127		-1.577

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.729
r_dihedral_angle_3_deg	15.237
r_dihedral_angle_2_deg	12.315
r_dihedral_angle_1_deg	6.552
r_lrange_it	6.213
r_lrange_other	6.166
r_scangle_it	4.923
r_scangle_other	4.922
r_dihedral_angle_other_3_deg	3.816
r_scbond_it	3.257

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.729
r_dihedral_angle_3_deg	15.237
r_dihedral_angle_2_deg	12.315
r_dihedral_angle_1_deg	6.552
r_lrange_it	6.213
r_lrange_other	6.166
r_scangle_it	4.923
r_scangle_other	4.922
r_dihedral_angle_other_3_deg	3.816
r_scbond_it	3.257
r_scbond_other	3.256
r_mcangle_it	3.093
r_mcangle_other	3.092
r_mcbond_it	2.197
r_mcbond_other	2.197
r_angle_refined_deg	1.773
r_angle_other_deg	0.604
r_nbd_refined	0.216
r_symmetry_nbd_other	0.197
r_nbtor_refined	0.186
r_nbd_other	0.161
r_symmetry_nbd_refined	0.149
r_xyhbond_nbd_refined	0.131
r_symmetry_xyhbond_nbd_refined	0.117
r_chiral_restr	0.09
r_symmetry_nbtor_other	0.086
r_gen_planes_refined	0.012
r_bond_refined_d	0.011
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2329
Nucleic Acid Atoms
Solvent Atoms	252
Heterogen Atoms	31

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.