Experiment: 9SOS

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6MAV

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8.4	293.15	0.2 M Lithium Citrate tribasic tetrahydrate, 20% PEG3350

Crystal Properties
Matthews coefficient	Solvent content
2.22	44.51

Symmetry
Space Group	P 2 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 4M		2024-05-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE MASSIF-3	0.9677	ESRF	MASSIF-3

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	43.87	97.7	0.074	0.1	0.067	0.992	8.7	3		12629

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2	2.05	99.8		0.296	0.398	0.265	0.912	1.1	3

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2	43.868	12603	569	96.671	0.202	0.1995	0.1996	0.255	0.2548	RANDOM	40.619

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.323			5.109		-3.785

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	16.172
r_dihedral_angle_6_deg	15.315
r_dihedral_angle_2_deg	14.969
r_lrange_it	11.014
r_lrange_other	11.014
r_dihedral_angle_1_deg	9.02
r_scangle_other	8.41
r_scangle_it	8.409
r_mcangle_it	7.797
r_mcangle_other	7.794

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	16.172
r_dihedral_angle_6_deg	15.315
r_dihedral_angle_2_deg	14.969
r_lrange_it	11.014
r_lrange_other	11.014
r_dihedral_angle_1_deg	9.02
r_scangle_other	8.41
r_scangle_it	8.409
r_mcangle_it	7.797
r_mcangle_other	7.794
r_scbond_it	6.061
r_scbond_other	6.049
r_mcbond_it	5.301
r_mcbond_other	5.289
r_angle_refined_deg	2.254
r_angle_other_deg	0.922
r_symmetry_xyhbond_nbd_refined	0.197
r_nbd_refined	0.19
r_nbtor_refined	0.178
r_symmetry_nbd_other	0.175
r_nbd_other	0.156
r_xyhbond_nbd_refined	0.145
r_symmetry_nbd_refined	0.131
r_chiral_restr	0.121
r_symmetry_nbtor_other	0.086
r_bond_refined_d	0.013
r_gen_planes_refined	0.011
r_bond_other_d	0.003
r_gen_planes_other	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1319
Nucleic Acid Atoms
Solvent Atoms	46
Heterogen Atoms