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Crystal structure of LRH-1/TIF-2 peptide in complex with CP4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 1.25 M Ammonium phosphate monobasic
0.9 Ammonium phosphate dibasic
Crystal Properties Matthews coefficient Solvent content 2.8 56.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.95 α = 90 b = 68.375 β = 90 c = 82.77 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2025-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 52.71 100 0.075 0.078 0.021 1 17.4 13.3 20392
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.27 100 1.074 1.116 0.301 0.885 13.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 52.71 20392 1078 99.98 0.21591 0.21439 0.2243 0.2443 0.2116 RANDOM 57.065
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.81 -3.3 0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.825 r_long_range_B_refined 9.984 r_long_range_B_other 9.982 r_dihedral_angle_2_deg 9.518 r_scangle_other 7.987 r_mcangle_it 5.957 r_mcangle_other 5.955 r_dihedral_angle_1_deg 5.421 r_scbond_it 5.189 r_scbond_other 5.134
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.825 r_long_range_B_refined 9.984 r_long_range_B_other 9.982 r_dihedral_angle_2_deg 9.518 r_scangle_other 7.987 r_mcangle_it 5.957 r_mcangle_other 5.955 r_dihedral_angle_1_deg 5.421 r_scbond_it 5.189 r_scbond_other 5.134 r_mcbond_it 4.213 r_mcbond_other 4.207 r_angle_refined_deg 1.371 r_angle_other_deg 0.458 r_chiral_restr 0.061 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2108 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement Aimless data scaling xia2 data reduction MOLREP phasing PDB_EXTRACT data extraction