9SIN | pdb_00009sin

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	9SIM

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	4.6	294	20 mM Tris-Hcl, 2M Na-formate, 100 mM Na-acetate pH 4.6

Crystal Properties
Matthews coefficient	Solvent content
3.61	65.97

Symmetry
Space Group	H 3

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-02-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97926	ALBA	XALOC

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	48.07	99.2	0.999	11.8	3.5		86511			27.22

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.04	99.7		0.62	1.7	3.6

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2	48.07	86510	4438	99.165	0.168	0.1663	0.1666	0.1907	0.1911	37.328

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.619	-0.31		-0.619		2.008

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	13.565
r_dihedral_angle_3_deg	10.691
r_dihedral_angle_1_deg	6.972
r_dihedral_angle_2_deg	6.023
r_lrange_it	4.187
r_lrange_other	3.921
r_scangle_it	1.784
r_scangle_other	1.784
r_mcangle_it	1.577
r_mcangle_other	1.577

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	13.565
r_dihedral_angle_3_deg	10.691
r_dihedral_angle_1_deg	6.972
r_dihedral_angle_2_deg	6.023
r_lrange_it	4.187
r_lrange_other	3.921
r_scangle_it	1.784
r_scangle_other	1.784
r_mcangle_it	1.577
r_mcangle_other	1.577
r_scbond_it	1.036
r_scbond_other	1.035
r_mcbond_it	0.896
r_mcbond_other	0.896
r_angle_refined_deg	0.89
r_angle_other_deg	0.34
r_symmetry_nbd_other	0.189
r_nbd_refined	0.18
r_nbtor_refined	0.166
r_nbd_other	0.157
r_symmetry_nbd_refined	0.15
r_xyhbond_nbd_refined	0.107
r_symmetry_xyhbond_nbd_refined	0.088
r_metal_ion_refined	0.087
r_symmetry_nbtor_other	0.079
r_chiral_restr	0.041
r_bond_refined_d	0.002
r_gen_planes_refined	0.002
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6305
Nucleic Acid Atoms
Solvent Atoms	629
Heterogen Atoms	248

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.