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Human UCK1 in complex with NHC and ATP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 Condition C2 of Morpheus Screen: 0.09M NPS, 0.1 M Buffer System 1 pH 6.5, 50 % (v/v) EDO_P8K
Crystal Properties Matthews coefficient Solvent content 2.66 53.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.886 α = 90 b = 154.639 β = 98.77 c = 67.568 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2025-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.976 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.396 77.32 99.1 0.992 11.5 7.2 51109
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 0.387
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.396 77.32 51065 2587 99.003 0.209 0.2064 0.2075 0.2535 0.2544 71.415
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.079 -1.184 -0.592 -1.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.617 r_dihedral_angle_6_deg 14.568 r_lrange_it 13.87 r_lrange_other 13.854 r_scangle_it 11.837 r_scangle_other 11.836 r_dihedral_angle_2_deg 11.028 r_mcangle_it 10.128 r_mcangle_other 10.128 r_scbond_it 8.252
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.617 r_dihedral_angle_6_deg 14.568 r_lrange_it 13.87 r_lrange_other 13.854 r_scangle_it 11.837 r_scangle_other 11.836 r_dihedral_angle_2_deg 11.028 r_mcangle_it 10.128 r_mcangle_other 10.128 r_scbond_it 8.252 r_scbond_other 8.251 r_mcbond_it 7.286 r_mcbond_other 7.283 r_dihedral_angle_1_deg 6.164 r_angle_refined_deg 1.797 r_angle_other_deg 0.606 r_symmetry_xyhbond_nbd_other 0.352 r_chiral_restr_other 0.339 r_dihedral_angle_other_2_deg 0.285 r_nbd_other 0.25 r_xyhbond_nbd_refined 0.236 r_nbd_refined 0.223 r_symmetry_nbd_other 0.2 r_nbtor_refined 0.184 r_symmetry_nbd_refined 0.167 r_ncsr_local_group_3 0.089 r_ncsr_local_group_6 0.087 r_ncsr_local_group_5 0.085 r_chiral_restr 0.082 r_symmetry_nbtor_other 0.081 r_ncsr_local_group_2 0.081 r_ncsr_local_group_4 0.068 r_ncsr_local_group_1 0.063 r_symmetry_xyhbond_nbd_refined 0.019 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6784 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms 150
Software Software Software Name Purpose REFMAC refinement AutoProcess data reduction AutoProcess data scaling PHASER phasing