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Human UCK1 in complex with NHC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 Condition C2 of Morpheus Screen: 0.09M NPS, 0.1 M Buffer System 1 pH 6.5, 50 % (v/v) EDO_P8K
Crystal Properties Matthews coefficient Solvent content 2.65 53.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.546 α = 90 b = 155.093 β = 99.624 c = 67.543 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2025-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.976 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.179 77.547 96.6 0.997 0.6 7.1 65838
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.18 2.22 0.442
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.179 77.547 65502 3198 96.103 0.211 0.2094 0.2119 0.2495 0.2514 60.621
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.129 -2.323 0.804 -1.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.491 r_dihedral_angle_6_deg 14.771 r_lrange_other 11.525 r_lrange_it 11.515 r_dihedral_angle_2_deg 10.633 r_scangle_it 9.684 r_scangle_other 9.682 r_mcangle_other 8.321 r_mcangle_it 8.318 r_scbond_it 6.718
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.491 r_dihedral_angle_6_deg 14.771 r_lrange_other 11.525 r_lrange_it 11.515 r_dihedral_angle_2_deg 10.633 r_scangle_it 9.684 r_scangle_other 9.682 r_mcangle_other 8.321 r_mcangle_it 8.318 r_scbond_it 6.718 r_scbond_other 6.717 r_mcbond_it 6.024 r_mcbond_other 6.019 r_dihedral_angle_1_deg 5.896 r_angle_refined_deg 1.797 r_angle_other_deg 0.613 r_nbd_other 0.236 r_nbd_refined 0.215 r_symmetry_nbd_other 0.197 r_xyhbond_nbd_refined 0.188 r_symmetry_nbd_refined 0.185 r_nbtor_refined 0.182 r_symmetry_xyhbond_nbd_refined 0.127 r_ncsr_local_group_3 0.094 r_ncsr_local_group_6 0.092 r_ncsr_local_group_2 0.088 r_chiral_restr 0.084 r_symmetry_nbtor_other 0.08 r_ncsr_local_group_5 0.08 r_ncsr_local_group_4 0.079 r_ncsr_local_group_1 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6863 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement AutoProcess data reduction AutoProcess data scaling PHASER phasing