Experiment: 9SD8

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	9SD4

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8	289	Precipitant ratio 1:1 Co-crystallized 5% (0.27 mM) Glucose. Condition: 20% PEG 8K, 0.05 M KPO4

Crystal Properties
Matthews coefficient	Solvent content
2.2	44.18

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2021-10-31	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97918	ALBA	XALOC

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.61	159.454	99.98	0.027	0.9977	12.637	12.71		1747763			27.7

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.61	1.638	99.88		0.566	0.6222	1.158	10.42

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.61	159.45	166028	8735	99.91	0.17557	0.17379	0.1844	0.20937	0.2193	RANDOM	37.22

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
2.35			-2.02		-0.32

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	13.77
r_dihedral_angle_2_deg	11.778
r_dihedral_angle_1_deg	8.517
r_long_range_B_refined	6.855
r_long_range_B_other	6.828
r_scangle_other	5.277
r_mcangle_other	3.567
r_mcangle_it	3.566
r_scbond_it	3.48
r_scbond_other	3.48

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	13.77
r_dihedral_angle_2_deg	11.778
r_dihedral_angle_1_deg	8.517
r_long_range_B_refined	6.855
r_long_range_B_other	6.828
r_scangle_other	5.277
r_mcangle_other	3.567
r_mcangle_it	3.566
r_scbond_it	3.48
r_scbond_other	3.48
r_mcbond_it	2.536
r_mcbond_other	2.534
r_angle_refined_deg	1.708
r_angle_other_deg	0.599
r_chiral_restr	0.088
r_gen_planes_refined	0.009
r_bond_refined_d	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	10587
Nucleic Acid Atoms
Solvent Atoms	794
Heterogen Atoms	94