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14-3-3sigma protein binding to macrocycle 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7
0.19 M CaCl2
5% glycerol
24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.64 53.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.308 α = 90 b = 70.401 β = 90 c = 128.166 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2024-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873128 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 47.44 90.9 0.999 18.5 13.2 69433
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.62 0.803 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 47.44 65822 3533 90.93 0.17421 0.17273 0.1845 0.20099 0.208 RANDOM 27.888
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 -0.59 1.16
RMS Deviations Key Refinement Restraint Deviation r_scbond_other 21.621 r_scbond_it 21.615 r_scangle_other 18.55 r_dihedral_angle_2_deg 17.33 r_long_range_B_other 15.877 r_long_range_B_refined 15.766 r_dihedral_angle_3_deg 13.66 r_mcangle_other 8.724 r_mcangle_it 8.714 r_mcbond_it 8.223
RMS Deviations Key Refinement Restraint Deviation r_scbond_other 21.621 r_scbond_it 21.615 r_scangle_other 18.55 r_dihedral_angle_2_deg 17.33 r_long_range_B_other 15.877 r_long_range_B_refined 15.766 r_dihedral_angle_3_deg 13.66 r_mcangle_other 8.724 r_mcangle_it 8.714 r_mcbond_it 8.223 r_mcbond_other 8.213 r_dihedral_angle_1_deg 5.06 r_angle_refined_deg 1.389 r_angle_other_deg 0.546 r_chiral_restr 0.074 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3616 Nucleic Acid Atoms Solvent Atoms 404 Heterogen Atoms 125
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing