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EGFR (T790M,L858R) in complex with NCL-26007
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8HV6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.15M Sodium Citrate, 0.1M TRIS pH8.5, 25% PEG400
Crystal Properties Matthews coefficient Solvent content 3.32 62.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.18 α = 90 b = 143.18 β = 90 c = 143.18 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 PIXEL DECTRIS EIGER2 XE 16M 2024-11-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.89842 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50.62 100 0.169 0.173 0.037 1 16.7 41.3 19240
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 100 5.998 6.14 1.31 0.564 0.8 42.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.423 50.62 18520 952 99.075 0.192 0.1892 0.1893 0.2461 0.2459 84.954
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 20.217 r_dihedral_angle_3_deg 16.007 r_scangle_it 14.647 r_dihedral_angle_6_deg 14.515 r_dihedral_angle_2_deg 13.986 r_mcangle_it 11.448 r_scbond_it 10.192 r_mcbond_it 7.829 r_dihedral_angle_1_deg 6.442 r_angle_refined_deg 1.722
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 20.217 r_dihedral_angle_3_deg 16.007 r_scangle_it 14.647 r_dihedral_angle_6_deg 14.515 r_dihedral_angle_2_deg 13.986 r_mcangle_it 11.448 r_scbond_it 10.192 r_mcbond_it 7.829 r_dihedral_angle_1_deg 6.442 r_angle_refined_deg 1.722 r_nbtor_refined 0.316 r_symmetry_nbd_refined 0.236 r_nbd_refined 0.213 r_xyhbond_nbd_refined 0.21 r_symmetry_xyhbond_nbd_refined 0.179 r_chiral_restr 0.115 r_gen_planes_refined 0.007 r_bond_refined_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2585 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data scaling pointless data scaling PHASER phasing xia2 data reduction