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Ternary structure of 14-3-3s, CRAF R256S NS mutant phosphopeptide (pS259), and compound 22 (1083853)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7 0.19 M CaCl2 5% glycerol 24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.88 57.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.785 α = 90 b = 89.36 β = 90 c = 117.293 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M 2023-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.967697 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 60.78 98.8 0.997 13.3 12.4 59256
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 0.782
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 54.03 56180 3018 98.72 0.19157 0.19037 0.2012 0.21318 0.2209 RANDOM 34.01
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.26 0.6 0.66
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 15.856 r_long_range_B_refined 15.782 r_dihedral_angle_2_deg 14.346 r_scangle_other 14.129 r_dihedral_angle_3_deg 13.12 r_mcangle_other 13.105 r_mcangle_it 13.1 r_scbond_it 12.656 r_scbond_other 12.655 r_mcbond_it 11.846
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 15.856 r_long_range_B_refined 15.782 r_dihedral_angle_2_deg 14.346 r_scangle_other 14.129 r_dihedral_angle_3_deg 13.12 r_mcangle_other 13.105 r_mcangle_it 13.1 r_scbond_it 12.656 r_scbond_other 12.655 r_mcbond_it 11.846 r_mcbond_other 11.844 r_dihedral_angle_1_deg 5.582 r_angle_refined_deg 0.945 r_angle_other_deg 0.411 r_chiral_restr 0.048 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3868 Nucleic Acid Atoms Solvent Atoms 297 Heterogen Atoms 50
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing