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Ternary structure of 14-3-3s, CRAF V263A NS mutant phosphopeptide (pS259), and compound 23 (1083848)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7 0.19 M CaCl2 5% glycerol 24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.91 57.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.026 α = 90 b = 89.368 β = 90 c = 117.851 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M 2023-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.967697 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 58.93 99.8 0.999 19.3 13.4 55674
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.89 0.809
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 54.25 55622 2779 99.713 0.21 0.209 0.2189 0.2386 0.2501 RANDOM 20.574
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.88 1.105 0.775
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.853 r_dihedral_angle_3_deg 13.909 r_lrange_it 6.231 r_lrange_other 6.164 r_dihedral_angle_1_deg 5.685 r_dihedral_angle_2_deg 3.951 r_scangle_it 3.278 r_scangle_other 3.278 r_mcangle_it 2.929 r_mcangle_other 2.929
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.853 r_dihedral_angle_3_deg 13.909 r_lrange_it 6.231 r_lrange_other 6.164 r_dihedral_angle_1_deg 5.685 r_dihedral_angle_2_deg 3.951 r_scangle_it 3.278 r_scangle_other 3.278 r_mcangle_it 2.929 r_mcangle_other 2.929 r_scbond_it 2.024 r_scbond_other 2.023 r_mcbond_it 1.665 r_mcbond_other 1.665 r_angle_refined_deg 1.145 r_angle_other_deg 0.491 r_nbd_refined 0.232 r_nbtor_refined 0.174 r_symmetry_nbd_other 0.159 r_symmetry_nbd_refined 0.152 r_xyhbond_nbd_refined 0.139 r_nbd_other 0.135 r_symmetry_xyhbond_nbd_refined 0.117 r_ncsr_local_group_1 0.113 r_symmetry_nbtor_other 0.069 r_chiral_restr 0.067 r_metal_ion_refined 0.028 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3857 Nucleic Acid Atoms Solvent Atoms 295 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling MOLREP phasing