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Ternary structure of 14-3-3s, CRAF S257L NS mutant phosphopeptide (pS259), and compound 23 (1083848)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7 0.19 M CaCl2 5% glycerol 24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.91 57.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.143 α = 90 b = 89.635 β = 90 c = 118.387 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M 2023-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.967697 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 59.19 99.7 0.998 17.1 12.5 44627
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 0.945
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 50.56 42329 2250 99.64 0.19372 0.19198 0.2239 0.22656 0.2572 RANDOM 24.777
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 0.47 -1.36
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 16.597 r_long_range_B_refined 16.514 r_dihedral_angle_2_deg 15.805 r_scangle_other 14.826 r_dihedral_angle_3_deg 13.44 r_scbond_it 12.818 r_scbond_other 12.818 r_mcangle_it 12.779 r_mcangle_other 12.779 r_mcbond_it 10.1
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 16.597 r_long_range_B_refined 16.514 r_dihedral_angle_2_deg 15.805 r_scangle_other 14.826 r_dihedral_angle_3_deg 13.44 r_scbond_it 12.818 r_scbond_other 12.818 r_mcangle_it 12.779 r_mcangle_other 12.779 r_mcbond_it 10.1 r_mcbond_other 10.098 r_dihedral_angle_1_deg 5.76 r_angle_refined_deg 0.943 r_angle_other_deg 0.402 r_chiral_restr 0.046 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3891 Nucleic Acid Atoms Solvent Atoms 328 Heterogen Atoms 49
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing