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Ternary structure of 14-3-3s, CRAF V263A NS mutant phosphopeptide (pS259), and compound 78 (1124378)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7 0.19 M CaCl2 5% glycerol 24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 3.25 62.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.453 α = 90 b = 150.66 β = 90 c = 76.958 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2024-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873128 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 76.96 99.9 0.997 9.9 12.5 20154
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.21 0.797
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 76.96 19186 957 99.87 0.20579 0.20436 0.2386 0.23324 0.266 RANDOM 36.35
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.25 -2.75 -1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.023 r_long_range_B_other 9.277 r_long_range_B_refined 9.274 r_scangle_other 7.126 r_dihedral_angle_1_deg 6.228 r_mcangle_it 5.255 r_mcangle_other 5.253 r_scbond_it 4.668 r_scbond_other 4.667 r_dihedral_angle_2_deg 3.493
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.023 r_long_range_B_other 9.277 r_long_range_B_refined 9.274 r_scangle_other 7.126 r_dihedral_angle_1_deg 6.228 r_mcangle_it 5.255 r_mcangle_other 5.253 r_scbond_it 4.668 r_scbond_other 4.667 r_dihedral_angle_2_deg 3.493 r_mcbond_it 3.476 r_mcbond_other 3.464 r_angle_refined_deg 1.742 r_angle_other_deg 0.619 r_chiral_restr 0.09 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1938 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms 26
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing