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Ternary structure of 14-3-3, CRAF R256S NS mutant phosphopeptide (pS259), and compound 78 (1124378)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7 0.19 M CaCl2 5% glycerol 24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.64 53.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.511 α = 90 b = 112.822 β = 90 c = 63.017 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2023-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873128 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 66.6 99.6 0.996 9.5 4.1 34311
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.7 0.742
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.67 66.6 32522 1766 99.35 0.17728 0.17596 0.1875 0.20103 0.2059 RANDOM 18.777
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 -0.19 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.144 r_long_range_B_refined 6.273 r_long_range_B_other 6.158 r_dihedral_angle_1_deg 5.407 r_scangle_other 4.598 r_dihedral_angle_2_deg 3.539 r_scbond_it 2.958 r_scbond_other 2.956 r_mcangle_other 2.874 r_mcangle_it 2.864
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.144 r_long_range_B_refined 6.273 r_long_range_B_other 6.158 r_dihedral_angle_1_deg 5.407 r_scangle_other 4.598 r_dihedral_angle_2_deg 3.539 r_scbond_it 2.958 r_scbond_other 2.956 r_mcangle_other 2.874 r_mcangle_it 2.864 r_mcbond_it 1.729 r_mcbond_other 1.712 r_angle_refined_deg 1.396 r_angle_other_deg 0.521 r_chiral_restr 0.063 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1942 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 25
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing