Experiment: 9S0L

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
in silico model	AlphaFold

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.4	293	0.1M NaCit, 3.6M ammonium sulfate, pH 5.4, 3% glycerol

Crystal Properties
Matthews coefficient	Solvent content
2.19	43.88

Symmetry
Space Group	P 1 21 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 XE 16M		2025-04-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.9762	Diamond	I03

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.7	67.39	99.8	0.116	0.125	0.996	9.3	6.8		92071

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.7	1.73	95		0.635	0.711	0.848	0.8	5

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.7	67.388	91935	1952	99.616	0.186	0.1847	0.1985	0.2287	0.2415	18.337

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
2.444		0.462	-1.805		-0.776

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.986
r_dihedral_angle_3_deg	11.727
r_dihedral_angle_2_deg	8.355
r_dihedral_angle_1_deg	6.173
r_lrange_it	5.009
r_lrange_other	4.794
r_scangle_it	3.768
r_scangle_other	3.766
r_scbond_it	2.41
r_scbond_other	2.375

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.986
r_dihedral_angle_3_deg	11.727
r_dihedral_angle_2_deg	8.355
r_dihedral_angle_1_deg	6.173
r_lrange_it	5.009
r_lrange_other	4.794
r_scangle_it	3.768
r_scangle_other	3.766
r_scbond_it	2.41
r_scbond_other	2.375
r_mcangle_it	1.997
r_mcangle_other	1.997
r_angle_refined_deg	1.533
r_mcbond_it	1.406
r_mcbond_other	1.406
r_angle_other_deg	0.569
r_nbd_other	0.226
r_nbd_refined	0.219
r_symmetry_nbd_refined	0.213
r_symmetry_nbd_other	0.188
r_nbtor_refined	0.182
r_symmetry_xyhbond_nbd_refined	0.166
r_xyhbond_nbd_refined	0.161
r_chiral_restr	0.084
r_symmetry_nbtor_other	0.074
r_symmetry_xyhbond_nbd_other	0.05
r_bond_refined_d	0.008
r_gen_planes_refined	0.008
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6269
Nucleic Acid Atoms
Solvent Atoms	1077
Heterogen Atoms	52

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9S0L | pdb_00009s0l