☰ Navigation Tabs
Alpha-Methylacyl-CoA racemase from Mycobacterium tuberculosis in complex with 2-(3-(2-Phenylethoxy)phenylthiol)propanoyl-CoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9I2T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 295.15 4 M ammonium acetate, 0.1 M Bis-Trispropane, pH 7.0
Crystal Properties Matthews coefficient Solvent content 4.01 69.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 277.518 α = 90 b = 277.518 β = 90 c = 390.381 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2024-11-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.953731 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 226.19 100 0.062 0.996 8.4 27.3 435005
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 0.63 0.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.1 226.188 434880 21418 99.971 0.226 0.2237 0.2365 0.2616 0.2351 42.047
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.006 0.006 -0.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.078 r_dihedral_angle_2_deg 14.803 r_dihedral_angle_6_deg 14.358 r_lrange_it 8.001 r_lrange_other 7.99 r_dihedral_angle_1_deg 7.058 r_scangle_it 5.957 r_scangle_other 5.957 r_mcangle_it 5.82 r_mcangle_other 5.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.078 r_dihedral_angle_2_deg 14.803 r_dihedral_angle_6_deg 14.358 r_lrange_it 8.001 r_lrange_other 7.99 r_dihedral_angle_1_deg 7.058 r_scangle_it 5.957 r_scangle_other 5.957 r_mcangle_it 5.82 r_mcangle_other 5.82 r_mcbond_it 3.934 r_mcbond_other 3.934 r_scbond_it 3.914 r_scbond_other 3.913 r_dihedral_angle_other_2_deg 1.835 r_angle_refined_deg 1.746 r_angle_other_deg 0.574 r_nbd_refined 0.225 r_symmetry_nbd_other 0.195 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.174 r_nbd_other 0.171 r_symmetry_nbd_refined 0.16 r_symmetry_xyhbond_nbd_refined 0.126 r_symmetry_xyhbond_nbd_other 0.102 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 32540 Nucleic Acid Atoms Solvent Atoms 1865 Heterogen Atoms 816
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing Coot model building