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Bifunctional Non-haem Iron Oxygenase NovR Involved in Novobiocin Biosynthesis with product bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E4C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 NULL
Crystal Properties Matthews coefficient Solvent content 2.45 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.508 α = 90 b = 138.968 β = 101.444 c = 100.615 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 56.89 97.5 0.079 0.086 13.5 4.9 106383 22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.89 84.7 0.509 0.627 2.1 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.791 49.356 106276 5347 97.406 0.162 0.1608 0.1609 0.1883 0.1883 32.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.55 1.331 -0.397 0.378
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.484 r_dihedral_angle_3_deg 13.092 r_dihedral_angle_2_deg 8.488 r_lrange_it 7.931 r_dihedral_angle_1_deg 6.08 r_scangle_it 4.425 r_scbond_it 2.909 r_mcangle_it 2.626 r_angle_refined_deg 1.826 r_mcbond_it 1.708
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.484 r_dihedral_angle_3_deg 13.092 r_dihedral_angle_2_deg 8.488 r_lrange_it 7.931 r_dihedral_angle_1_deg 6.08 r_scangle_it 4.425 r_scbond_it 2.909 r_mcangle_it 2.626 r_angle_refined_deg 1.826 r_mcbond_it 1.708 r_nbtor_refined 0.311 r_nbd_refined 0.199 r_symmetry_xyhbond_nbd_refined 0.182 r_xyhbond_nbd_refined 0.172 r_symmetry_nbd_refined 0.153 r_chiral_restr 0.111 r_ncsr_local_group_3 0.082 r_ncsr_local_group_4 0.08 r_ncsr_local_group_6 0.079 r_ncsr_local_group_1 0.075 r_ncsr_local_group_2 0.074 r_ncsr_local_group_5 0.069 r_bond_refined_d 0.01 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8113 Nucleic Acid Atoms Solvent Atoms 883 Heterogen Atoms 154
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing