9RXU | pdb_00009rxu

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2NZD

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6	291	55 mM KCl, 85 mM MnCl2, 20 mM K-Cacodylate (pH 6.0)

Crystal Properties
Matthews coefficient	Solvent content
2.69	54.3

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	90	PIXEL	PSI PILATUS 6M		2009-12-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	1.5	SLS	X06SA

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.3	94.1	96.5	0.994	8.6	4.8		92229

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.3	2.42			0.576

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.3	94.1	92082	1846	96.36	0.228	0.2272	0.2288	0.2556	0.2586	91.737

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.577			-3.64		2.063

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.9
r_dihedral_angle_6_deg	14.853
r_lrange_it	12.641
r_lrange_other	12.641
r_scangle_it	9.264
r_scangle_other	9.264
r_mcangle_it	6.358
r_mcangle_other	6.357
r_scbond_it	6.147
r_scbond_other	6.146

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.9
r_dihedral_angle_6_deg	14.853
r_lrange_it	12.641
r_lrange_other	12.641
r_scangle_it	9.264
r_scangle_other	9.264
r_mcangle_it	6.358
r_mcangle_other	6.357
r_scbond_it	6.147
r_scbond_other	6.146
r_dihedral_angle_2_deg	5.932
r_dihedral_angle_1_deg	5.518
r_mcbond_it	4.328
r_mcbond_other	4.327
r_angle_refined_deg	1.412
r_dihedral_angle_other_2_deg	0.691
r_angle_other_deg	0.434
r_nbtor_refined	0.211
r_symmetry_nbd_other	0.204
r_metal_ion_refined	0.202
r_nbd_refined	0.197
r_nbd_other	0.157
r_xyhbond_nbd_refined	0.148
r_symmetry_nbd_refined	0.137
r_symmetry_xyhbond_nbd_refined	0.135
r_symmetry_nbtor_other	0.076
r_symmetry_xyhbond_nbd_other	0.069
r_chiral_restr	0.056
r_gen_planes_refined	0.005
r_bond_refined_d	0.004
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6086
Nucleic Acid Atoms	5939
Solvent Atoms	22
Heterogen Atoms	79

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.