☰ Navigation Tabs
E20K/N28G/V36L/D43K/Q48E/I59A/E61K/E72K/V76L/N79S/I92A/D126K/A142V/D153K/D154E/S158T FLAVODOXIN FROM ANABAENA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FLV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 28% PEG 4000, 0.1 M Tris-HCl, pH 8.5 and 0.2 M MgCl2
Crystal Properties Matthews coefficient Solvent content 2.01 38.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.516 α = 90 b = 64.972 β = 90 c = 81.127 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 6M 2025-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 81.13 99.4 0.071 0.076 0.028 13.3 7.4 60145
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 98.5 0.876 0.941 0.339 2.5 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.4 46.96 56989 3086 99.23 0.18139 0.18006 0.1887 0.20612 0.2134 RANDOM 18.943
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 -0.64 1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.387 r_dihedral_angle_2_deg 7.059 r_dihedral_angle_1_deg 6.471 r_long_range_B_refined 5.593 r_long_range_B_other 5.527 r_scangle_other 4.85 r_scbond_it 3.187 r_scbond_other 3.186 r_mcangle_other 2.779 r_mcangle_it 2.777
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.387 r_dihedral_angle_2_deg 7.059 r_dihedral_angle_1_deg 6.471 r_long_range_B_refined 5.593 r_long_range_B_other 5.527 r_scangle_other 4.85 r_scbond_it 3.187 r_scbond_other 3.186 r_mcangle_other 2.779 r_mcangle_it 2.777 r_mcbond_it 1.905 r_mcbond_other 1.903 r_angle_refined_deg 1.817 r_angle_other_deg 0.657 r_chiral_restr 0.117 r_gen_planes_refined 0.012 r_bond_refined_d 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2646 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing