Experiment: 9RWC

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
in silico model	AlphaFold

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.4	293	0.1M NaCit, 3.8M ammonium sulfate, pH 5.4

Crystal Properties
Matthews coefficient	Solvent content
2.12	41.92

Symmetry
Space Group	P 1 21 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 XE 16M		2025-04-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.9762	Diamond	I03

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.797	85.376	92	0.1722	0.1858	0.0692	0.993	7.78	7.11		55625

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.797	1.855	90.1		0.5931	0.6423	0.2435	0.875	3.02	6.58	2781

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.797	85.376	55625	2715	73.814	0.198	0.1947	0.2048	0.2525	0.2567	9.143

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.534		-0.011	-0.223		-0.262

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.136
r_dihedral_angle_3_deg	12.274
r_dihedral_angle_2_deg	7.707
r_dihedral_angle_1_deg	6.436
r_lrange_it	4.312
r_lrange_other	3.962
r_scangle_it	2.318
r_scangle_other	2.316
r_angle_refined_deg	1.548
r_scbond_it	1.416

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.136
r_dihedral_angle_3_deg	12.274
r_dihedral_angle_2_deg	7.707
r_dihedral_angle_1_deg	6.436
r_lrange_it	4.312
r_lrange_other	3.962
r_scangle_it	2.318
r_scangle_other	2.316
r_angle_refined_deg	1.548
r_scbond_it	1.416
r_scbond_other	1.412
r_mcangle_it	1.363
r_mcangle_other	1.363
r_mcbond_it	0.833
r_mcbond_other	0.831
r_angle_other_deg	0.556
r_nbd_refined	0.217
r_xyhbond_nbd_refined	0.205
r_symmetry_nbd_refined	0.194
r_symmetry_nbd_other	0.191
r_nbd_other	0.19
r_nbtor_refined	0.189
r_symmetry_xyhbond_nbd_refined	0.181
r_chiral_restr	0.08
r_symmetry_nbtor_other	0.076
r_ncsr_local_group_1	0.063
r_symmetry_xyhbond_nbd_other	0.016
r_bond_refined_d	0.008
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6248
Nucleic Acid Atoms
Solvent Atoms	1013
Heterogen Atoms	52

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9RWC | pdb_00009rwc