☰ Navigation Tabs
In situ 3D ED/MicroED nanovolume structure of Magnaporthe grisea Woronin Body Major protein crystallized in cellulo
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KHI
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.382 α = 90 b = 57.382 β = 90 c = 198.122 γ = 120
Symmetry Space Group P 65 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B ELECTRON CRYSTALLOGRAPHY FREE R-VALUE 2.2 11.685 9244 499 87.538 0.214 0.2111 0.2427 0.2576 0.2906 47.112
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.035 0.07 -0.227
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.265 r_dihedral_angle_6_deg 13.687 r_dihedral_angle_3_deg 11.666 r_lrange_other 11.101 r_lrange_it 11.098 r_dihedral_angle_1_deg 8.36 r_scangle_it 8.018 r_scangle_other 8.013 r_mcangle_it 6.241 r_mcangle_other 6.238
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.265 r_dihedral_angle_6_deg 13.687 r_dihedral_angle_3_deg 11.666 r_lrange_other 11.101 r_lrange_it 11.098 r_dihedral_angle_1_deg 8.36 r_scangle_it 8.018 r_scangle_other 8.013 r_mcangle_it 6.241 r_mcangle_other 6.238 r_scbond_it 5.591 r_scbond_other 5.587 r_mcbond_it 4.279 r_mcbond_other 4.27 r_angle_refined_deg 1.297 r_angle_other_deg 0.476 r_symmetry_xyhbond_nbd_refined 0.223 r_symmetry_nbd_other 0.217 r_nbd_other 0.209 r_xyhbond_nbd_refined 0.191 r_nbd_refined 0.183 r_nbtor_refined 0.16 r_symmetry_nbd_refined 0.157 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.073 r_xyhbond_nbd_other 0.064 r_gen_planes_refined 0.007 r_bond_refined_d 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Sample Trichoplusia ni insect cell
Specimen Preparation Sample Aggregation State 3D ARRAY Vitrification Instrument LEICA PLUNGER Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method CRYSTALLOGRAPHY Number of Particles Reported Resolution (Å) 2.2 Resolution Method DIFFRACTION PATTERN/LAYERLINES Other Details Refinement Type Symmetry Type 3D CRYSTAL Space Group Name Length a 57.38 Length b 57.38 Length c 57.38 Angle Alpha 120 Angle Beta 90 Angle Gamma 120
Map-Model Fitting and Refinement Id 1 (1KHI) Refinement Space RECIPROCAL Refinement Protocol OTHER Refinement Target Overall B Value 51 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 0.0009
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode DIFFRACTION Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM MODEL FITTING Coot MODEL REFINEMENT REFMAC CRYSTALLOGRAPHY MERGING AIMLESS RECONSTRUCTION Coot RECONSTRUCTION REFMAC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE