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In situ 3D ED/MicroED microvolume structure of Magnaporthe grisea Woronin Body Major protein crystallized in cellulo
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other 1KHI
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.83 α = 90 b = 57.83 β = 90 c = 198.177 γ = 120
Symmetry Space Group P 65 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B ELECTRON CRYSTALLOGRAPHY FREE R-VALUE 1.9 1.9 16198 809 99.034 0.206 0.2052 0.2349 0.2292 0.2498 29.872
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.002 -0.001 -0.002 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.36 r_dihedral_angle_3_deg 11.234 r_lrange_other 10.955 r_lrange_it 10.916 r_scangle_it 7.602 r_scangle_other 7.598 r_dihedral_angle_1_deg 7.462 r_dihedral_angle_2_deg 7.142 r_mcangle_it 5.02 r_mcangle_other 5.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.36 r_dihedral_angle_3_deg 11.234 r_lrange_other 10.955 r_lrange_it 10.916 r_scangle_it 7.602 r_scangle_other 7.598 r_dihedral_angle_1_deg 7.462 r_dihedral_angle_2_deg 7.142 r_mcangle_it 5.02 r_mcangle_other 5.02 r_scbond_it 4.796 r_scbond_other 4.795 r_mcbond_it 3.221 r_mcbond_other 3.161 r_angle_refined_deg 1.454 r_angle_other_deg 0.5 r_symmetry_nbd_refined 0.269 r_nbd_other 0.249 r_xyhbond_nbd_refined 0.227 r_symmetry_nbd_other 0.221 r_nbd_refined 0.194 r_nbtor_refined 0.16 r_symmetry_xyhbond_nbd_refined 0.149 r_symmetry_nbtor_other 0.084 r_chiral_restr 0.076 r_symmetry_xyhbond_nbd_other 0.042 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Sample Trichoplusia ni insect cell
Specimen Preparation Sample Aggregation State 3D ARRAY Vitrification Instrument LEICA PLUNGER Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method CRYSTALLOGRAPHY Number of Particles Reported Resolution (Å) 1.9 Resolution Method DIFFRACTION PATTERN/LAYERLINES Other Details Refinement Type Symmetry Type 3D CRYSTAL Space Group Name Length a 57.83 Length b 57.83 Length c 57.83 Angle Alpha 120 Angle Beta 90 Angle Gamma 120
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol OTHER Refinement Target Overall B Value 32.1 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 0.0009
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode DIFFRACTION Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM MODEL FITTING Coot MODEL REFINEMENT REFMAC CRYSTALLOGRAPHY MERGING AIMLESS RECONSTRUCTION Coot RECONSTRUCTION REFMAC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE