☰ Navigation Tabs
Crystal structure of Cryptosporidium parvum Thioredoxin Reductase in complex with mono-carbene Au(I) complex Au(NHC)Cl
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9G92
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 294.15 0.1 M Tris/HCl, 0.1 M KSCN, PEG 2000 MME
Crystal Properties Matthews coefficient Solvent content 2.26 45.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.841 α = 90 b = 72.947 β = 90.52 c = 189.181 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2023-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.0 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 47.62 98.21 0.993 9.18 6.6 100806
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.279 0.553
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 47.34 95764 4966 98.31 0.21128 0.20908 0.2127 0.25483 0.2561 RANDOM 40.794
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -1.08 -0.3 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.009 r_dihedral_angle_4_deg 17.154 r_dihedral_angle_3_deg 14.009 r_long_range_B_other 8.035 r_long_range_B_refined 8.032 r_dihedral_angle_1_deg 7.251 r_scangle_other 6.398 r_mcangle_it 5.455 r_mcangle_other 5.454 r_scbond_other 4.365
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.009 r_dihedral_angle_4_deg 17.154 r_dihedral_angle_3_deg 14.009 r_long_range_B_other 8.035 r_long_range_B_refined 8.032 r_dihedral_angle_1_deg 7.251 r_scangle_other 6.398 r_mcangle_it 5.455 r_mcangle_other 5.454 r_scbond_other 4.365 r_scbond_it 4.364 r_mcbond_it 3.973 r_mcbond_other 3.973 r_angle_refined_deg 1.508 r_angle_other_deg 1.285 r_chiral_restr 0.072 r_bond_other_d 0.01 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14880 Nucleic Acid Atoms Solvent Atoms 315 Heterogen Atoms 216
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing